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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64411812_64412246_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
64411812 - 64412246
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
CCCTTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAA
U12 Branch Point Sequence:
TGCACTTTAAGT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
34.8
Major BPS
65.9
0.4
1
57.6
39
Major PPT
87.2
0.84
0.7
82.2
26.6
Minor 5ss
39.2
-1.2
3
46.9
43.8
Minor BPS
59.9
0.39
1.7
73.03
44

Associated Gene:

Gene:
SNCAIP
Ensembl Gene ID:
ENSAPLG00000015309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030191
64411682 - 64495633
83952