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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64413501_64414045_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64413501 - 64414045
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
CTCTCCTCAGAG
Flanking Amino Acid:
AAFTKGRSKPSVCLVCSKMY
Intron Amino Acid Position:
914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
34.5
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
29.7
-2.3
3.1
38.1
40.6
Minor BPS
46.9
-0.3
2
52.81
47.4

Associated Gene:

Gene:
SNCAIP
Ensembl Gene ID:
ENSAPLG00000015309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040701
64413316 - 64460665
47350