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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64425382_64428840_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64425382 - 64428840
Intron Length:
3459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGTAA
5'SS Class:
major
3'SS Sequence:
TGTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTGTTTTTACA
Flanking Amino Acid:
AQHGYLGCIQTLVEYGANVT
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
65.2
37.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
85.7
0.8
0.8
79.9
37.7
Minor 5ss
34
-1.8
3.6
45.7
49.5
Minor BPS
54.4
0.13
1.7
66.95
39.5

Associated Gene:

Gene:
SNCAIP
Ensembl Gene ID:
ENSAPLG00000015309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031271
64406584 - 64495633
89050
ENSAPLT00000030191
64411682 - 64495633
83952
ENSAPLT00000030101
64413636 - 64495633
81998
ENSAPLT00000015978
64406735 - 64495633
88899
ENSAPLT00000040701
64413316 - 64460665
47350