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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64428967_64433368_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64428967 - 64433368
Intron Length:
4402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTGTGGCATCT
Flanking Amino Acid:
LIHYAGCYGQEKILLWLLQF
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
73.5
0.53
0.7
72.1
26.1
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
36.3
-0.9
2.7
62.9
47.5

Associated Gene:

Gene:
SNCAIP
Ensembl Gene ID:
ENSAPLG00000015309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030101
64413636 - 64495633
81998
ENSAPLT00000015978
64406735 - 64495633
88899
ENSAPLT00000040701
64413316 - 64460665
47350
ENSAPLT00000031271
64406584 - 64495633
89050
ENSAPLT00000030191
64411682 - 64495633
83952