About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64436176_64437899_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64436176 - 64437899
Intron Length:
1724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTCTTTATCA
Flanking Amino Acid:
IVKEGQISLLPHLAADNLDK
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
87
27.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.1
0.7
0.8
81
29.4
Minor 5ss
40.4
-1.1
2.8
51.7
39.2
Minor BPS
64.4
0.45
1.6
70.42
42.6

Associated Gene:

Gene:
SNCAIP
Ensembl Gene ID:
ENSAPLG00000015309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030191
64411682 - 64495633
83952
ENSAPLT00000030101
64413636 - 64495633
81998
ENSAPLT00000015978
64406735 - 64495633
88899
ENSAPLT00000040701
64413316 - 64460665
47350
ENSAPLT00000031271
64406584 - 64495633
89050