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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64438763_64452832_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64438763 - 64452832
Intron Length:
14070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTC
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTCCTCTATT
Flanking Amino Acid:
RCDSQNEDRSVSSSSWNCGV
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.7
31.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.7
0.83
0.7
84.8
30
Minor 5ss
48.6
-0.1
2.8
67.6
43.7
Minor BPS
62.1
0.46
1.9
81.52
40.2

Associated Gene:

Gene:
SNCAIP
Ensembl Gene ID:
ENSAPLG00000015309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030191
64411682 - 64495633
83952
ENSAPLT00000030101
64413636 - 64495633
81998
ENSAPLT00000015978
64406735 - 64495633
88899
ENSAPLT00000040701
64413316 - 64460665
47350
ENSAPLT00000031271
64406584 - 64495633
89050