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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64460666_64495556_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
64460666 - 64495556
Intron Length:
34891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTAATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCTTAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
81.5
0.71
0.9
82.7
32.7
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
80
0.92
1.1
81.43
33.4

Associated Gene:

Gene:
SNCAIP
Ensembl Gene ID:
ENSAPLG00000015309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030191
64411682 - 64495633
83952
ENSAPLT00000030101
64413636 - 64495633
81998
ENSAPLT00000015978
64406735 - 64495633
88899
ENSAPLT00000031271
64406584 - 64495633
89050