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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64586399_64587682_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64586399 - 64587682
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATG
5'SS Class:
strong_major
3'SS Sequence:
TGCACTGTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TCTTTTTGCACT
Flanking Amino Acid:
RCAAEENCLASSAYRADVRD
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.7
44.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
71.7
0.49
1
64.1
41.5
Minor 5ss
41.6
-0.9
3.2
56.4
48
Minor BPS
53.2
0.18
1.9
75.64
41.7

Associated Gene:

Gene:
LOX
Ensembl Gene ID:
ENSAPLG00000003826
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003924
64585790 - 64593841
8052