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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64587821_64590114_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
64587821 - 64590114
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
CGTGGTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CCATCTTTAATA
Flanking Amino Acid:
RYSWEWHSCHQHYHSMDEFS
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
67.8
32.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
68.5
0.42
1
60.5
40.4
Minor 5ss
28.7
-2.4
3.1
36.5
41.7
Minor BPS
69
0.59
1.2
67.35
40

Associated Gene:

Gene:
LOX
Ensembl Gene ID:
ENSAPLG00000003826
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003924
64585790 - 64593841
8052