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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64606450_64607219_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
64606450 - 64607219
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTGTACTTAATG
Flanking Amino Acid:
KDQPLQNRRTALFKKEPQLK
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.7
0.65
0.8
72.5
31.6
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
63.4
0.28
1.6
63.96
44.3

Associated Gene:

Gene:
SRFBP1
Ensembl Gene ID:
ENSAPLG00000003938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004030
64605575 - 64681598
76024
ENSAPLT00000040989
64606262 - 64655346
49085