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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_64630406_64654252_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64630406 - 64654252
Intron Length:
23847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
CTTTCATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATATCTTTCATC
Flanking Amino Acid:
RLIEEIHAMKEIKPDQVTKL
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78.9
0.65
0.8
72.9
30.8
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
60
0.3
1.7
69.19
36.7

Associated Gene:

Gene:
SRFBP1
Ensembl Gene ID:
ENSAPLG00000003938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004030
64605575 - 64681598
76024