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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6473490_6488773_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6473490 - 6488773
Intron Length:
15284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCGTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTCTTTCTGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
74.8
0.56
0.9
73
37.3
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
42.4
-0.5
3.7
79.06
43.7

Associated Gene:

Gene:
ZBTB7C
Ensembl Gene ID:
ENSAPLG00000016660
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038222
6473391 - 6548954
75564