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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65256348_65257763_R

Intron Information:

Intron Rank:
134712
Intron Class:
major
Intron Phase:
Intron Coordinates:
65256348 - 65257763
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GATTATTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
74
36.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
33.9
-1.8
2.9
42.4
44.3
Minor BPS
50.1
0.08
1.9
70.68
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019808
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037171
65256208 - 65260902
4695