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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65257876_65260659_R

Intron Information:

Intron Rank:
134713
Intron Class:
major
Intron Phase:
Intron Coordinates:
65257876 - 65260659
Intron Length:
2784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
CCCCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
AGGATCACAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74.2
37
Major BPS
59.7
0.24
1
67
29.8
Major PPT
73.6
0.53
0.7
67.5
26.1
Minor 5ss
42.6
-0.8
3.5
61.2
44.7
Minor BPS
37.5
-1
1.9
36.25
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019808
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037171
65256208 - 65260902
4695