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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6542184_6547770_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6542184 - 6547770
Intron Length:
5587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCATC
5'SS Class:
major
3'SS Sequence:
TTCCTTTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCGAT
U12 Branch Point Sequence:
ACCTCCTGACCC
Flanking Amino Acid:
MCTICEVRFTRQDKLKIHMR
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
0.9
74
36.6
Major BPS
68.7
0.46
1.3
66.4
42.2
Major PPT
86.9
0.83
0.7
83.4
24.8
Minor 5ss
44.6
-0.6
2.8
59.7
45.1
Minor BPS
52.7
0.06
1.8
61.28
44

Associated Gene:

Gene:
ZBTB7C
Ensembl Gene ID:
ENSAPLG00000016660
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035900
6477557 - 6548413
70857
ENSAPLT00000021468
6473391 - 6548954
75564
ENSAPLT00000038222
6473391 - 6548954
75564