Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65586478_65588209_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65586478 - 65588209

Intron Length:

1732

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGGGA

5'SS Class:

major

3'SS Sequence:

TCTGTTTTTTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCAATTTTAAAT

Flanking Amino Acid:

DKPFDREPLKTAGLQSDLVF

Intron Amino Acid Position:

620

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

42.4

Major BPS

90.4

0.7

90.2

19.3

Major PPT

78.1

0.63

82.6

32.9

Minor 5ss

27.2

-2.6

3.6

37.6

47.2

Minor BPS

58.7

0.35

1.4

70.19

40.7

Associated Gene:

Gene:

HSD17B4

Ensembl Gene ID:

ENSAPLG00000009938

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010437

65576685 - 65637198

60514