Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65603806_65607882_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

65603806 - 65607882

Intron Length:

4077

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTCA

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTGCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TTGCAGTGAAAT

Flanking Amino Acid:

GGKRTSEKAKVTVNPPKRPP

Intron Amino Acid Position:

480

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.1

28.4

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

80.3

0.68

0.9

77.5

36.3

Minor 5ss

39.8

-1.1

2.8

50.7

45.7

Minor BPS

43.1

-0.4

2.3

65.02

44.5

Associated Gene:

Gene:

HSD17B4

Ensembl Gene ID:

ENSAPLG00000009938

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010437

65576685 - 65637198

60514