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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65607987_65609351_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65607987 - 65609351
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
AGCACATGACCA
Flanking Amino Acid:
KGSGAVLLIDVNTYCGNDLV
Intron Amino Acid Position:
445

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
79.3
0.66
0.8
75.9
32.7
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
42.4
-0.5
1.9
49.74
40.5

Associated Gene:

Gene:
HSD17B4
Ensembl Gene ID:
ENSAPLG00000009938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010437
65576685 - 65637198
60514