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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65612317_65621804_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65612317 - 65621804
Intron Length:
9488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAG
5'SS Class:
major
3'SS Sequence:
TTGCTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAATT
Flanking Amino Acid:
DNASKPRSIQESISVLNDAL
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
62.1
44.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.7
0.69
0.8
73.6
37
Minor 5ss
36.6
-1.5
3.1
46.7
48.6
Minor BPS
66.4
0.59
1.4
80.75
35.2

Associated Gene:

Gene:
HSD17B4
Ensembl Gene ID:
ENSAPLG00000009938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010437
65576685 - 65637198
60514