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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65630285_65630386_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65630285 - 65630386
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTCCTGATTA
Flanking Amino Acid:
GRIDIVINNAGILRDRSFVR
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.6
0.73
0.8
81.4
36.1
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
60.3
0.32
1.7
72.02
40.5

Associated Gene:

Gene:
HSD17B4
Ensembl Gene ID:
ENSAPLG00000009938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010437
65576685 - 65637198
60514