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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65630409_65631432_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65630409 - 65631432
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGTTG
5'SS Class:
major
3'SS Sequence:
TTCCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
KSALEAFGRIDIVINNAGIL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
63.9
42.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
89.5
0.89
0.6
88
22
Minor 5ss
38.6
-1.3
3.6
55.1
49.1
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
HSD17B4
Ensembl Gene ID:
ENSAPLG00000009938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010437
65576685 - 65637198
60514