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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65631493_65631999_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65631493 - 65631999
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTTACTTAAAT
Flanking Amino Acid:
AKGGKAVPNYDSVEDGEKLV
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.4
31.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
92
0.95
0.6
88.5
21.2
Minor 5ss
48.1
-0.2
2.5
63.2
43.8
Minor BPS
74.2
0.84
1.5
89.33
34.1

Associated Gene:

Gene:
HSD17B4
Ensembl Gene ID:
ENSAPLG00000009938
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010437
65576685 - 65637198
60514