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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65721510_65723206_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65721510 - 65723206
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGGCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAAAT
Flanking Amino Acid:
LVSPTNSLVHAFICHDSGAT
Intron Amino Acid Position:
2898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.69
0.9
76.9
37.3
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
68.9
0.67
1.5
84.9
34.8

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024938
65720416 - 65808583
88168
ENSAPLT00000021431
65720416 - 65808583
88168
ENSAPLT00000009708
65720416 - 65808583
88168