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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65723984_65724426_R

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65723984 - 65724426
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTTTCTTACTG
Flanking Amino Acid:
LTGTSPKPYLIWQCHNKTAN
Intron Amino Acid Position:
2850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
85.7
0.8
0.8
83.8
31.2
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
62.6
0.26
1.7
67.31
41

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009708
65720416 - 65808583
88168
ENSAPLT00000024938
65720416 - 65808583
88168
ENSAPLT00000021431
65720416 - 65808583
88168