About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65729907_65730574_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65729907 - 65730574
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TGACTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
CCTTCTGTAACT
Flanking Amino Acid:
DIITAFAVNKANRNCIAIAS
Intron Amino Acid Position:
2651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
83
0.74
0.9
80.7
36.7
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
61.6
0.44
2.1
78.9
44

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021431
65720416 - 65808583
88168
ENSAPLT00000009708
65720416 - 65808583
88168
ENSAPLT00000024938
65720416 - 65808583
88168