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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65730662_65734372_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65730662 - 65734372
Intron Length:
3711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTAAATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTTAAAT
Flanking Amino Acid:
IFTKKRCLNEIETDMGYPGG
Intron Amino Acid Position:
2622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.9
75
38
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
67.6
0.63
1.3
77.65
38.8

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009708
65720416 - 65808583
88168