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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65733081_65734372_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65733081 - 65734372
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTGGTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
TTCTTGGTGAAG
Flanking Amino Acid:
IFTKKRCLNESLEDHNETMK
Intron Amino Acid Position:
2622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
68.9
0.43
1.2
71.2
38.7
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
39.3
-0.9
2.6
50.32
44.3

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024938
65720416 - 65808583
88168
ENSAPLT00000021431
65720416 - 65808583
88168