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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65734491_65735719_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
65734491 - 65735719
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAATATTTAATT
Flanking Amino Acid:
TLLEPTNTPFRSNSHIALSV
Intron Amino Acid Position:
2582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.5
0.8
0.7
81.6
30.4
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
67.9
0.64
1.4
79.11
36.8

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024938
65720416 - 65808583
88168
ENSAPLT00000021431
65720416 - 65808583
88168
ENSAPLT00000009708
65720416 - 65808583
88168