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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65735922_65736464_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65735922 - 65736464
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTAAGC
5'SS Class:
major
3'SS Sequence:
TATGTCATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTGTTTATAT
Flanking Amino Acid:
FYPLAGHDLSELPVSSPICH
Intron Amino Acid Position:
2515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
62.7
42.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
72.6
0.51
0.9
63.7
42.4
Minor 5ss
32.5
-2
3.2
43.8
43.5
Minor BPS
50
0.08
2.1
74.15
42.7

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024938
65720416 - 65808583
88168
ENSAPLT00000021431
65720416 - 65808583
88168
ENSAPLT00000009708
65720416 - 65808583
88168