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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65740555_65749014_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
65740555 - 65749014
Intron Length:
8460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAG
U12 Branch Point Sequence:
CAGTCCTAAGCA
Flanking Amino Acid:
RGQLQLKTKADDGEKQQKRF
Intron Amino Acid Position:
2385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
84.7
32.3
Major BPS
58
0.2
1.5
65.8
39.5
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
38.2
-1.3
2.8
50.3
39.9
Minor BPS
49.7
-0
2
60.18
45.7

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009708
65720416 - 65808583
88168
ENSAPLT00000024938
65720416 - 65808583
88168
ENSAPLT00000021431
65720416 - 65808583
88168