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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6574300_6582268_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6574300 - 6582268

Intron Length:

7969

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTGAGTGCA

5'SS Class:

major

3'SS Sequence:

TTTATGTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TTTGGTTTATGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

66.6

32.2

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

81.2

0.7

0.9

73.6

41.7

Minor 5ss

29.4

-2.4

3.1

34.1

36.3

Minor BPS

46.1

-0.2

2.3

70.73

46.8

Associated Gene:

Gene:

SMAD2

Ensembl Gene ID:

ENSAPLG00000004964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005158

6574134 - 6619272

45139