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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65758530_65762352_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
65758530 - 65762352
Intron Length:
3823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTTTTTCACC
Flanking Amino Acid:
IHSLRKCIEKVAKAAFQRNN
Intron Amino Acid Position:
1634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79
0.65
0.9
72.8
36.9
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
63.8
0.42
1.7
74.61
36.2

Associated Gene:

Gene:
DMXL1
Ensembl Gene ID:
ENSAPLG00000009280
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024938
65720416 - 65808583
88168
ENSAPLT00000021431
65720416 - 65808583
88168
ENSAPLT00000009708
65720416 - 65808583
88168