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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6579581_6582268_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6579581 - 6582268

Intron Length:

2688

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

TTTATGTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

TTTGGTTTATGT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

81.2

0.7

0.9

73.6

41.7

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

46.1

-0.2

2.3

70.73

46.8

Associated Gene:

Gene:

SMAD2

Ensembl Gene ID:

ENSAPLG00000004964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005125

6579515 - 6619272

39758