About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_65860648_65865779_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
65860648 - 65865779

Intron Length:
5132

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTGAGTAAG

5'SS Class:
strong_major

3'SS Sequence:
TTTTTTTTTACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTTTTTTACA

Flanking Amino Acid:
CLYIIQHPAEESRVLRTVPL

Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
92.1
0.99
0.7
83.1
30.9

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
98.8
1.1
0.5
95.2
16.3

Minor 5ss
29.6
-2.3
2.6
32.5
42.4

Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
DTWD2

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

65830265 - 65920274
90010

65853134 - 65919320
66187