Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6606927_6607383_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6606927 - 6607383

Intron Length:

457

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TTTGCTTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

ATACTTTGAAAT

Flanking Amino Acid:

PYHYQRVETPVLPPVLVPRH

Intron Amino Acid Position:

174

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.9

41.1

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

88.4

0.86

0.8

80.8

36.8

Minor 5ss

32.4

-2

3.2

43.2

Minor BPS

49.9

0.07

1.5

66.88

37.1

Associated Gene:

Gene:

SMAD2

Ensembl Gene ID:

ENSAPLG00000004964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005158

6574134 - 6619272

45139

ENSAPLT00000005125

6579515 - 6619272

39758

ENSAPLT00000005160

6576273 - 6619272

43000