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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6607519_6610714_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6607519 - 6610714
Intron Length:
3196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTTTTAAAA
Flanking Amino Acid:
GIEPQSNYIPETPPPGYISE
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.8
0.63
1
75.3
37.5
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
72.4
0.7
1.2
78.49
31.1

Associated Gene:

Gene:
SMAD2
Ensembl Gene ID:
ENSAPLG00000004964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005158
6574134 - 6619272
45139
ENSAPLT00000005125
6579515 - 6619272
39758
ENSAPLT00000005160
6576273 - 6619272
43000