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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6610790_6612055_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6610790 - 6612055

Intron Length:

1266

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATTT

5'SS Class:

strong_major

3'SS Sequence:

GTTGCTTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

TTGCTCTTAATC

Flanking Amino Acid:

DQQLNQSMDTGSPAELSPST

Intron Amino Acid Position:

244

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

27.7

Major BPS

0.92

0.9

86.2

29.1

Major PPT

71.5

0.48

66.2

39.6

Minor 5ss

43.2

-0.7

3.3

64.8

46.5

Minor BPS

72.7

0.69

1.2

75.21

35.5

Associated Gene:

Gene:

SMAD2

Ensembl Gene ID:

ENSAPLG00000004964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005160

6576273 - 6619272

43000

ENSAPLT00000005158

6574134 - 6619272

45139

ENSAPLT00000005125

6579515 - 6619272

39758