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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6612110_6613155_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6612110 - 6613155
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTGTTTAACT
Flanking Amino Acid:
STLSPVNHSLDLQPVTYSEP
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
72.6
0.79
1.7
87.23
39

Associated Gene:

Gene:
SMAD2
Ensembl Gene ID:
ENSAPLG00000004964
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005158
6574134 - 6619272
45139
ENSAPLT00000005125
6579515 - 6619272
39758
ENSAPLT00000005160
6576273 - 6619272
43000