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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6615321_6615492_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6615321 - 6615492

Intron Length:

172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TTTTTTTTGACA

Flanking Amino Acid:

HPATVCKIPPGCNLKIFNNQ

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

1.1

82.6

29.9

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

92.1

0.95

0.5

89.1

19.9

Minor 5ss

32.4

-2

2.5

40.2

Minor BPS

79.3

0.92

85.48

26.3

Associated Gene:

Gene:

SMAD2

Ensembl Gene ID:

ENSAPLG00000004964

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005160

6576273 - 6619272

43000

ENSAPLT00000005158

6574134 - 6619272

45139

ENSAPLT00000005125

6579515 - 6619272

39758