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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66387371_66387494_F

Intron Information:

Intron Rank:
140253
Intron Class:
major
Intron Phase:
Intron Coordinates:
66387371 - 66387494
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCTTGTT
5'SS Class:
major
3'SS Sequence:
AACTGAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCATTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.4
69.2
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.7
0.33
1
55.2
43
Minor 5ss
33
-1.9
3.5
50.3
45.9
Minor BPS
63.9
0.52
1.4
77.18
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025434
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044204
66387087 - 66388552
1466