About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66439791_66444410_F

Intron Information:

Intron Rank:
137945
Intron Class:
major
Intron Phase:
Intron Coordinates:
66439791 - 66444410
Intron Length:
4620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATGTAAGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.8
0.83
0.7
84.7
23
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
36.3
-0.9
2
51.53
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024247
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040581
66439611 - 66444554
4944