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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66643985_66647431_F

Intron Information:

Intron Rank:
136900
Intron Class:
major
Intron Phase:
Intron Coordinates:
66643985 - 66647431
Intron Length:
3447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ACCTACTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73
0.52
0.8
69.7
35.7
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
49.8
0.06
1.8
71.66
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046235
66640378 - 66648782
8405
ENSAPLT00000027481
66622814 - 66649083
26270