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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66647536_66647945_F

Intron Information:

Intron Rank:
136907
Intron Class:
major
Intron Phase:
Intron Coordinates:
66647536 - 66647945
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGACCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTCTGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
83.4
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.9
0.47
0.9
63.2
38.2
Minor 5ss
35.7
-1.6
3.2
49.9
40.5
Minor BPS
64.5
0.43
1.7
78.77
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046235
66640378 - 66648782
8405