About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66649214_66651438_F

Intron Information:

Intron Rank:
136908
Intron Class:
major
Intron Phase:
Intron Coordinates:
66649214 - 66651438
Intron Length:
2225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATATTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGATATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.7
0.64
1
73.4
40.6
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
56.9
0.3
1.6
71.91
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047276
66649069 - 66652971
3903