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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66816815_66819591_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66816815 - 66819591
Intron Length:
2777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TGCTTTCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAG
U12 Branch Point Sequence:
TTCTCCAGAGCC
Flanking Amino Acid:
SEPISISHGNYTRQYPVFVG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
46.3
-0.2
1.7
60.4
45.8
Major PPT
78.1
0.63
0.8
72.5
32.4
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
49.7
-0
2
68.55
42.6

Associated Gene:

Gene:
SEMA6A
Ensembl Gene ID:
ENSAPLG00000014502
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015153
66816677 - 66879945
63269
ENSAPLT00000047680
66816677 - 66879945
63269
ENSAPLT00000034437
66816677 - 66879945
63269
ENSAPLT00000024342
66816677 - 66879945
63269