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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66825430_66826972_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66825430 - 66826972
Intron Length:
1543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGATCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTTCTTGATC
Flanking Amino Acid:
SHTEEIYFSKKLTWKSRQAD
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
80.1
0.68
0.9
73.8
36.7
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
80
0.93
1
84.94
26.6

Associated Gene:

Gene:
SEMA6A
Ensembl Gene ID:
ENSAPLG00000014502
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024342
66816677 - 66879945
63269
ENSAPLT00000015153
66816677 - 66879945
63269
ENSAPLT00000047680
66816677 - 66879945
63269
ENSAPLT00000034437
66816677 - 66879945
63269