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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66827036_66827873_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66827036 - 66827873
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
DTCRMKGKHKDECHNFIKVL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77.9
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.9
0.92
0.7
89.5
26.5
Minor 5ss
39.7
-1.2
3.2
56.4
48
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
SEMA6A
Ensembl Gene ID:
ENSAPLG00000014502
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024342
66816677 - 66879945
63269
ENSAPLT00000015153
66816677 - 66879945
63269
ENSAPLT00000047680
66816677 - 66879945
63269
ENSAPLT00000034437
66816677 - 66879945
63269