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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66830795_66833662_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66830795 - 66833662
Intron Length:
2868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
CACTTCCCACCT
Flanking Amino Acid:
AKHANVALFAEGKLYSATVT
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
79
0.65
0.7
76.6
25.4
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
42.3
-0.5
2
57.29
45.3

Associated Gene:

Gene:
SEMA6A
Ensembl Gene ID:
ENSAPLG00000014502
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047680
66816677 - 66879945
63269
ENSAPLT00000034437
66816677 - 66879945
63269
ENSAPLT00000015153
66816677 - 66879945
63269