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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66839359_66842141_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66839359 - 66842141
Intron Length:
2783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CTTGTTTTATTT
Flanking Amino Acid:
PVPDERVPKPRPGCCAGSTS
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.6
0.71
0.9
82
34.8
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
52.9
0.17
1.7
70.13
42.3

Associated Gene:

Gene:
SEMA6A
Ensembl Gene ID:
ENSAPLG00000014502
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034437
66816677 - 66879945
63269
ENSAPLT00000024342
66816677 - 66879945
63269
ENSAPLT00000015153
66816677 - 66879945
63269
ENSAPLT00000047680
66816677 - 66879945
63269