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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66847442_66849337_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66847442 - 66849337
Intron Length:
1896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TCCCCTGTTATT
Flanking Amino Acid:
GNTDGLGDCQNSFVALNGHS
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
76.8
0.67
1
66
40.9
Major PPT
84.9
0.79
0.8
81.7
35.4
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
43.8
-0.4
2.2
60.36
43.9

Associated Gene:

Gene:
SEMA6A
Ensembl Gene ID:
ENSAPLG00000014502
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034437
66816677 - 66879945
63269
ENSAPLT00000024342
66816677 - 66879945
63269
ENSAPLT00000015153
66816677 - 66879945
63269
ENSAPLT00000047680
66816677 - 66879945
63269